Publications

2022

Journal: Molecular and Cellular Probes; Date of Issue: 2022-11

A method for early diagnosis of lung cancer from tumor originated DNA fragments using plasma cfDNA methylome and fragmentome profiles

Journal: Molecular and Cellular Probes; Date of Issue: 2022-10

The application of circulating tumor cell and cell-free DNA liquid biopsies in ovarian cancer

Journal: Journal of Thoracic Oncology; Date of Issue: 2022-09

Circulating Tumor DNA to Identify Genomic Biomarkers of Radiation Sensitivity in Locally Advanced Non-Small Cell Lung Cancer

Journal: Translational Oncology; Date of Issue: 2022-02

Clinical significance of circulating tumor cells after chemotherapy in unresectable pancreatic ductal adenocarcinoma

2021

Journal: cancers; Date of Issue: 2021-10

Circulating Tumor Cell Clusters Are Cloaked with Platelets and Correlate with Poor Prognosis in Unresectable Pancreatic Cancer

Journal: Journal of Clinical Medicine; Date of Issue: 2021-09

Vimentin-Positive Circulating Tumor Cells as Diagnostic and Prognostic Biomarkers in Patients with Biliary Tract Cancer

Journal: Cancer Research (2021); Date of Issue: 2021-07

Comprehensive analysis of blood-based biomarkers to immunotherapy using circulating tumor cells, peripheral blood cells and circulating tumor DNA in advanced non-small cell lung cancer

Journal: Scientific Reports; Date of Issue: 2021-06

Identifying molecular targets for reverse aging using integrated network analysis of transcriptomic and epigenomic changes during aging

Journal: Translational Lung Cancer Research; Date of Issue: 2021-05

Comprehensive analysis of blood-based biomarkers for predicting immunotherapy benefits in patients with advanced non-small cell lung cancer

Journal: JKMS; Date of Issue: 2021-04

A Clinical Risk Score to Predict In-hospital Mortality from COVID-19 in South Korea

Journal: Gigascience; Date of Issue: 2021-03

Comparative analysis of 7 short-read sequencing platforms using the Korean Reference Genome: MGI and Illumina sequencing benchmark for whole-genome sequencing

Journal: Scientific Reports; Date of Issue: 2021-01

Circulating tumour cells as an indicator of early and systemic recurrence after surgical resection in pancreatic ductal adenocarcinoma

Journal: 2021 Gastrointestinal Cancers Symposium; Date of Issue: 2021

A translational study to evaluate genomic markers and concordance with circulating-tumor DNA and circulating tumor cells to predict clinical outcomes in gastrointestinal and pancreatobiliary cancers: Valor trial.

2020

Journal: BJU International Date of Issue: 2020-07

The combination of size-based separation and selection-free technology provides higher circulating tumour cells detection sensitivity than either method alone in patients with metastatic prostate cancer

Journal: Science Advances; Date of Issue: 2020-05

Korean Genome Project: 1094 Korean personal genomes with clinical information

Journal: Diagnostics (Basel); Date of Issue: 2020-04

Circulating Tumor Cells Enumerated by a Centrifugal Microfluidic Device as a Predictive Marker for Monitoring Ovarian Cancer Treatment: A Pilot Study

Journal: Theranostics; Date of Issue: 2020-04

A lab-on-a-disc platform enables serial monitoring of individual CTCs associated with tumor progression during EGFR-targeted therapy for patients with NSCLC

2019

Journal: Lung Cancer; Date of Issue: 2019-12

Circulating Tumor Cell Number Is Associated with Primary Tumor Volume in Patients with Lung Adenocarcinoma

Journal: Anticancer Research; Date of Issue: 2019-12

Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment

Journal: Translational Psychiatry; Date of Issue: 2019-10

Depression and suicide risk prediction models using blood-derived multi-omics data

Journal: Gigascience; Date of Issue: 2019-09

Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

Journal: Genome Biology; Date of Issue: 2019-08

Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles

Journal: BMC Biology; Date of Issue: 2019-03

The genome of the giant Nomura’s jellyfish sheds light on the early evolution of active predation

Journal: Genome Biology and Evolution; Date of Issue: 2019-03

The draft genome of an octocoral, Dendronephthya gigantea

2018

Journal: EXPERIMENTAL AND THERAPEUTIC MEDICINE; Date of Issue: 2018-06

Personalized genomic analysis based on circulating tumor cells of extra-skeletal Ewing sarcoma of the uterus: A case report of a 16-year-old Korean female

Journal: Scientific Reports; Date of Issue: 2018-04

KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses

Journal: Human Genetics; Date of Issue: 2018-02

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia

Journal: Genomics; Date of Issue: 2018-02

Sequencing and analysis of the whole genome of Indian Gujarati male

2017

Journal: PLoS One; Date of Issue: 2017-07

Myotis rufoniger genome sequence and analyses: M. rufoniger’s genomic feature and the decreasing effective population size of Myotis bats

Journal: PLoS One; Date of Issue: 2017-06

Circulating tumor cells detected by lab-on-a-disc: Role in early diagnosis of gastric cancer

Journal: Science Advances; Date of Issue: 2017-02

Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago

Journal: Scientific Reports; Date of Issue: 2017-01

Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans

Journal: BMB Reports; Date of Issue: 2017-01

Perspectives provided by leopard and other cat genomes: how diet determined the evolutionary history of carnivores, omnivores, and herbivores

2016

Journal: Nature Communications; Date of Issue: 2016-11

An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

Journal: Analytical Chemistry; Date of Issue: 2016-11

FAST: Size-Selective, Clog-Free Isolation of Rare Cancer Cells from Whole Blood at a Liquid–Liquid Interface

Journal: Genome Biology; Date of Issue: 2016-10

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly

Journal: Scientific Reports; Date of Issue: 2016-08

The genetics of an early Neolithic pastoralist from the Zagros, Iran

2015

Journal: Genome Biology; Date of Issue: 2015-12

Genomic legacy of the African cheetah, Acinonyx jubatus

Journal: Science; Date of Issue: 2015-11

Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent

Journal: Cancer Research and Treatment; Date of Issue: 2015-10

Overexpression of plasminogen activator inhibitor-1 in advanced gastric cancer with aggressive lymph node metastasis

Journal: Genome Biology; Date of Issue: 2015-10

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

Journal: Molecules and Cells; Date of Issue: 2015-03

Genome-Wide Analysis of DNA Methylation before-and after Exercise in the Thoroughbred Horse with MeDIP-Seq

Journal: BMC Genomics; Date of Issue: 2015-03

Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan

Journal: Cell Reports; Date of Issue: 2015-01

Insights into the evolution of longevity from the bowhead whale genome

2014

Journal: Oncogene; Date of Issue: 2014-11

PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling

Journal: BMC Genomics; Date of Issue: 2014-11

Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

Journal: PLoS One; Date of Issue: 2014-10

The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection with Semiconductor Sequencing Platform

Journal: BMC Genomics; Date of Issue: 2014-07

Genome-wide analysis of DNA methylation patterns in horse

Journal: Genomes & Informatics; Date of Issue: 2014-06

New Lung Cancer Panel for High-Throughput Targeted Resequencing

Journal: Genome Biology; Date of Issue: 2014-04

Genomic profile analysis of diffuse-type gastric cancers

Journal: PLoS One; Date of Issue: 2014-04

Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing

Journal: The Pharmacogenomics Journal; Date of Issue: 2014-04

Whole-genome analysis of a patient with early-stage small-cell lung cancer

2013

Journal: Nature Genetics; Date of Issue: 2013-11

Minke whale genome and aquatic adaptation in cetaceans

Journal: Scientific Reports; Date of Issue: 2013-10

Whole genome comparison of donor and cloned dogs

Journal: Nature Communications; Date of Issue: 2013-09

The tiger genome and comparative analysis with lion and snow leopard genomes

Journal: Analytical Biochemistry; Date of Issue: 2013-09

Enrichment of cancer cells from whole blood using a microfabricated porous filter

Journal: Bioinformatics; Date of Issue: 2013-09

iAnn: an event sharing platform for the life sciences

Journal: DNA Research; Date of Issue: 2013-06

Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse

Journal: Genome Research; Date of Issue: 2013-06

Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers

Journal: Current Biology; Date of Issue: 2013-04

The genetic basis of white tigers

2012

Journal: BMC Genomics; Date of Issue: 2012-09

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq

Journal: Plant Molecular Biology; Date of Issue: 2012-07

De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis

Journal: Proceedings of the National Academy of Sciences of the USA; Date of Issue: 2012-07

A public resource facilitating clinical use of genomes

Journal: Journal of Biomolecular Structure and Dynamics; Date of Issue: 2012-05

BetaDock: shape-priority docking method based on beta-complex

Journal: Proceedings of the National Academy of Sciences of the USA; Date of Issue: 2012-03

Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion

Journal: Nucleic Acids Research; Date of Issue: 2012-01

MetaBase – the wiki-database of biological databases

2011

Journal: BMC Genomics; Date of Issue: 2011-11

Liverome: a curated database of liver cancer-related gene signatures with self-contained context information

Journal: PLoS One; Date of Issue: 2011-11

Identification of close relatives in the HUGO Pan-Asian SNP database

Journal: PLoS One; Date of Issue: 2011-07

Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups

Journal: PLoS One; Date of Issue: 2011-06

PanSNPdb: the Pan-Asian SNP genotyping database

Journal: PLoS One; Date of Issue: 2011-04

Population genetic structure of peninsular Malaysia Malay sub-ethnic groups

Journal: Biochemical and Biophysical Research Communications; Date of Issue: 2011-04

Mutational hotspots in the mitochondrial genome of lung cancer

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